PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 477aa    MW: 50381.1 Da    PI: 9.2101
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00054genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  AA8G00054 61 FVCEICNKGFQRDQNLQLHRRGH 83
               89*******************88 PP

2zf-C2H2120.00066137159123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  AA8G00054 137 WKCEKCSKKYAVQSDWKAHSKIC 159
                58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-66083No hitNo description
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PfamPF121717.5E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355110102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-6132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPVDLDNSST VSGDASVSST GNQNPPPKSA VKKKRNLPGM PDPEAEVIAL SPKTLMATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPEVGCV HHEPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESAKNQTQSA KKLHQETVSK KKNPESDLKS PPVVNSPLPP PPPSPPSIAP  240
APSPAISVET EPVKIVSSSV LPIQSTDSPE IIEEAPRTSN ESVYAGLFAS TTTPTLFTPS  300
SSSIEPISLC LSTSHHGTSL FGPRLQEPPQ FLTPLPPQPP QPALSATALL QKAAQMGPTA  360
SGGSLLRGLG IVSTTSSSMD LTNHESSLAS GLGLGLPCGG GSGSSGLKEL MMGNSSVFGP  420
KQTTLDFLGL GRAVGNGGGS HGGGLSALLT SIGNGGIDLT ASFSSGEFSG KDIGRSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLRQRSSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280348.10.0hypothetical protein CARUB_v10026275mg
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLR0EWK50.0R0EWK5_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.8__2743__AT5G66730.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-168C2H2-like zinc finger protein